genomoncology/biomcp

BioMCP is an open source toolkit designed to empower AI assistants and agents with specialized biomedical knowledge. It follows the Model Context Protocol (MCP) to connect AI systems to authoritative biomedical data sources, enabling precise answers about clinical trials, scientific literature, and genomic variants.

Features

• Open Source (MIT License): Freely available for use and modification.
• MCP-Compliant: Implements the Model Context Protocol for integrating with AI systems.
• Data Source Integration:
  • PubMed & PubTator3: Access to biomedical literature and annotation.
  • ClinicalTrials.gov: Access to clinical trials data.
  • MyVariant.info: Access to information on genomic variants.
• Command Line Interface (CLI): Comprehensive CLI for direct database interaction.
• Testing Tools: Includes the MCP Inspector, a web interface for exploring and testing available tools.
• Python Package: Can be installed and utilized as a Python package.
• Example Repository: Companion repository with real prompts, research briefs, and evaluation runs for benchmarking and exploration.
• Enterprise Extension: OncoMCP extends BioMCP with enterprise-grade precision oncology features (via GenomOncology's POP platform).

Documentation

Comprehensive documentation is available at https://biomcp.org.

Source Code

https://github.com/genomoncology/biomcp

Category

api-integration-mcp-servers

Tags

mcp, biomedical, research, pubmed

Pricing

BioMCP is open source and available under the MIT License. No pricing information or paid plans are indicated for the core product.